Transcript: ENSDART00000173723.2 rorab-202

Description

RAR-related orphan receptor A, paralog b [Source:NCBI gene;Acc:554722]

Gene Synonyms

NR1F1-A, RORalpha-A, rora1, wu:fq24g04, zgc:55954

Location

About this transcript

This transcript has 11 exons, is annotated with 34 domains and features, is associated with 2309 variant alleles and maps to 197 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000019140.12	rorab-201	4174	474aa	ENSDARP00000015111.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJF4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000173723.2	rorab-202	4332	526aa	ENSDARP00000142860.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSP3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 11, Coding exons: 11, Transcript length: 4,332 bps, Translation length: 526 residues

Version

ENSDART00000173723.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]