Transcript: ENSDART00000173696.2 zgc:55733-204

Description

zgc:55733 [Source:ZFIN;Acc:ZDB-GENE-040426-791]

Location

Chromosome 7: 4,088,913-4,125,067 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 20 domains and features, is associated with 786 variant alleles and maps to 149 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103845.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173318.2	zgc:55733-203	5336	289aa	ENSDARP00000142065.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QGR2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000167182.3	zgc:55733-201	2513	289aa	ENSDARP00000134136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QGR2	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000173696.2	zgc:55733-204	1631	279aa	ENSDARP00000142800.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M9QBR9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000172971.2	zgc:55733-202	785	259aa	ENSDARP00000142125.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,631 bps, Translation length: 279 residues

Version

ENSDART00000173696.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000173696.2 zgc:55733-204

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000173696.2 zgc:55733-204

Summary

About Us

Get help

Our sister sites

Follow us