Transcript: ENSDART00000173688.2 scrib-205

Description

scribble planar cell polarity protein [Source:ZFIN;Acc:ZDB-GENE-030616-572]

Gene Synonyms

landlocked, llk, scrb1, scribble1, si:ch211-12p8.1, si:zc12p8.1

Location

Chromosome 7: 41,265,618-41,273,706 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 3 variant alleles and maps to 28 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000000861.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000074212.4	scrib-201	5175	1724aa	ENSDARP00000068701.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4H4B6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000174212.2	scrib-210	8074	1808aa	ENSDARP00000143072.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000174204.2	scrib-209	7921	1757aa	ENSDARP00000143155.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000164200.3	scrib-202	5600	1805aa	ENSDARP00000140814.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000173688.2	scrib-205	674	72aa	ENSDARP00000142912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000173655.2	scrib-204	736	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000173814.2	scrib-207	213	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000173474.2	scrib-203	104	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000173878.2	scrib-208	756	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000173740.3	scrib-206	532	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 674 bps, Translation length: 72 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000173688.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000173688.2 scrib-205

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Transcript: ENSDART00000173688.2 scrib-205

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