Transcript: ENSDART00000173662.2 si:dkey-165a24.9-201

Description

si:dkey-165a24.9 [Source:ZFIN;Acc:ZDB-GENE-141209-1]

Gene Synonyms

BX470211.1, gb:ck028746

Location

Chromosome 7: 22,702,224-22,706,942 forward strand.

About this transcript

This transcript has 3 exons, is associated with 162 variant alleles and maps to 119 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000090052.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000193008.1	si:dkey-165a24.9-204	1074	357aa	ENSDARP00000146237.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000173672.2	si:dkey-165a24.9-202	4401	353aa	ENSDARP00000142753.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F793	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000182054.1	si:dkey-165a24.9-203	1062	353aa	ENSDARP00000151137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F793	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000173662.2	si:dkey-165a24.9-201	1376	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,376 bps,

Version

ENSDART00000173662.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000173662.2 si:dkey-165a24.9-201

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Transcript: ENSDART00000173662.2 si:dkey-165a24.9-201

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