Transcript: ENSDART00000173636.2 frmd5b-205

Description

FERM domain containing 5b [Source:ZFIN;Acc:ZDB-GENE-060810-165]

Gene Synonyms

frmd5, im:7161681

Location

Chromosome 7: 30,139,740-30,143,092 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 6 domains and features, is associated with 297 variant alleles and maps to 21 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000079622.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110409.5	frmd5b-201	5558	571aa	ENSDARP00000104250.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F1C5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173636.2	frmd5b-205	783	183aa	ENSDARP00000142840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173582.2	frmd5b-202	510	86aa	ENSDARP00000142657.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000173594.2	frmd5b-204	789	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000173591.2	frmd5b-203	695	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 783 bps, Translation length: 183 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000173636.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000173636.2 frmd5b-205

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Transcript: ENSDART00000173636.2 frmd5b-205

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