Transcript: ENSDART00000173625.2 si:ch211-260e23.9-203

Description

si:ch211-260e23.9 [Source:ZFIN;Acc:ZDB-GENE-141222-48]

Location

Chromosome 7: 46,003,490-46,009,074 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 2 domains and features, is associated with 18 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000102572.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000183798.1	si:ch211-260e23.9-204	2533	164aa	ENSDARP00000151911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQ09	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000159700.3	si:ch211-260e23.9-201	1267	164aa	ENSDARP00000136464.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQ09	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173625.2	si:ch211-260e23.9-203	460	117aa	ENSDARP00000142674.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000162958.2	si:ch211-260e23.9-202	784	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 460 bps, Translation length: 117 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000173625.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000173625.2 si:ch211-260e23.9-203

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Transcript: ENSDART00000173625.2 si:ch211-260e23.9-203

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