Transcript: ENSDART00000173577.3 nfx1-201

Description

nuclear transcription factor, X-box binding 1 [Source:ZFIN;Acc:ZDB-GENE-160728-101]

Gene Synonyms

si:dkey-10f23.2

Location

About this transcript

This transcript has 24 exons, is annotated with 46 domains and features, is associated with 5 variant alleles and maps to 161 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173577.3	nfx1-201	3867	1083aa	ENSDARP00000142738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSC5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173779.2	nfx1-203	651	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000173615.2	nfx1-202	594	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000174357.2	nfx1-204	343	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 3,867 bps, Translation length: 1,083 residues

Version

ENSDART00000173577.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.