Transcript: ENSDART00000173516.2 nucb2a-202

Description

nucleobindin 2a [Source:ZFIN;Acc:ZDB-GENE-030826-14]

Gene Synonyms

cb638, nucb2, wu:fa03d10

Location

Chromosome 7: 27,025,481-27,033,080 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 15 domains and features, is associated with 413 variant alleles and maps to 82 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000036299.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052731.7	nucb2a-201	2115	496aa	ENSDARP00000052730.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QW82	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000191382.1	nucb2a-204	6280	507aa	ENSDARP00000152959.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RUA0	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000173561.2	nucb2a-203	885	272aa	ENSDARP00000142945.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSX4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173516.2	nucb2a-202	577	192aa	ENSDARP00000142724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSB2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 577 bps, Translation length: 192 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000173516.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000173516.2 nucb2a-202

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Transcript: ENSDART00000173516.2 nucb2a-202

Summary

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