Transcript: ENSDART00000173511.2 agrp-203

Description

agouti related neuropeptide [Source:ZFIN;Acc:ZDB-GENE-040817-1]

Gene Synonyms

agrp1, si:dkey-193l8.2

Location

Chromosome 7: 35,083,024-35,083,302 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 4 domains and features, is associated with 101 variant alleles and maps to 24 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069089.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000135250.4	agrp-202	677	126aa	ENSDARP00000116390.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000192732.1	agrp-204	1676	127aa	ENSDARP00000153699.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1P467	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000100253.5	agrp-201	555	126aa	ENSDARP00000091026.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000173511.2	agrp-203	203	36aa	ENSDARP00000142928.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 203 bps, Translation length: 36 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000173511.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

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Transcript: ENSDART00000173511.2 agrp-203

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Transcript: ENSDART00000173511.2 agrp-203

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