Transcript: ENSDART00000173462.2 atg13-203

Description

ATG13 autophagy related 13 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1149]

Gene Synonyms

zgc:63526

Location

About this transcript

This transcript has 8 exons, is associated with 3 variant alleles and maps to 104 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052324.6	atg13-201	2463	503aa	ENSDARP00000052323.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SYE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173669.2	atg13-204	822	274aa	ENSDARP00000142751.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000132772.2	atg13-202	755	186aa	ENSDARP00000120224.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173462.2	atg13-203	848	91aa	ENSDARP00000142881.1	Nonsense mediated decay	-	-

Summary

Statistics

Exons: 8, Coding exons: 4, Transcript length: 848 bps, Translation length: 91 residues

Version

ENSDART00000173462.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

not organism-supported [Definitions]