Transcript: ENSDART00000173436.2 si:dkey-280e21.3-202

Description

si:dkey-280e21.3 [Source:ZFIN;Acc:ZDB-GENE-140106-61]

Gene Synonyms

zmp:0000001101

Location

Chromosome 14: 25,465,346-25,502,537 forward strand.

About this transcript

This transcript has 17 exons, is annotated with 22 domains and features, is associated with 3 variant alleles and maps to 180 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000056519.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173436.2	si:dkey-280e21.3-202	5934	652aa	ENSDARP00000142109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LFT4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000187601.1	si:dkey-280e21.3-203	1961	394aa	ENSDARP00000145001.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PVT4	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000067500.7	si:dkey-280e21.3-201	1822	383aa	ENSDARP00000067499.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RAW5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 5,934 bps, Translation length: 652 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000173436.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000173436.2 si:dkey-280e21.3-202

Summary

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Transcript: ENSDART00000173436.2 si:dkey-280e21.3-202

Summary

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