Transcript: ENSDART00000173423.2 pcdh11-202

Description

protocadherin 11 [Source:ZFIN;Acc:ZDB-GENE-140106-21]

Gene Synonyms

zmp:0000001061

Location

About this transcript

This transcript has 3 exons, is annotated with 65 domains and features, is associated with 219 variant alleles and maps to 45 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000159727.2	pcdh11-201	4575	1097aa	ENSDARP00000137646.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ITD9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173423.2	pcdh11-202	3274	1009aa	ENSDARP00000142158.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LFY2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 3,274 bps, Translation length: 1,009 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000173423.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.