Transcript: ENSDART00000173377.2 si:dkey-17m8.2-202

Description

si:dkey-17m8.2 [Source:ZFIN;Acc:ZDB-GENE-110411-234]

Location

About this transcript

This transcript has 5 exons, is associated with 30 variant alleles and maps to 72 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051948.5	si:dkey-17m8.2-201	1406	321aa	ENSDARP00000051947.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F0M0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000173377.2	si:dkey-17m8.2-202	840	81aa	ENSDARP00000142066.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 5, Coding exons: 3, Transcript length: 840 bps, Translation length: 81 residues

Version

ENSDART00000173377.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.