Transcript: ENSDART00000173261.2 ubxn1-203

Description

UBX domain protein 1 [Source:NCBI gene;Acc:322073]

Gene Synonyms

fb49a05, wu:fb49a05, zgc:77531

Location

About this transcript

This transcript has 5 exons, is associated with 25 variant alleles and maps to 146 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000126979.4	ubxn1-201	1295	294aa	ENSDARP00000108064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QTX4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173284.2	ubxn1-204	820	222aa	ENSDARP00000142132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LFV6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000172952.2	ubxn1-202	437	124aa	ENSDARP00000142432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LGQ3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173261.2	ubxn1-203	520	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 520 bps,

Version

ENSDART00000173261.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.