Transcript: ENSDART00000173234.2 pkd1l2a-201

Description

polycystic kidney disease 1 like 2a [Source:ZFIN;Acc:ZDB-GENE-050208-89]

Location

About this transcript

This transcript has 17 exons, is annotated with 50 domains and features, is associated with 524 variant alleles and maps to 103 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000185070.1	pkd1l2a-202	8526	2484aa	ENSDARP00000148326.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q5E7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000173234.2	pkd1l2a-201	4430	1124aa	ENSDARP00000142251.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 4,430 bps, Translation length: 1,124 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000173234.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.