Transcript: ENSDART00000173220.2 map7d2b-205

Description

MAP7 domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091118-82]

Gene Synonyms

si:dkey-226l10.5

Location

Chromosome 24: 24,135,928-24,146,875 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 418 variant alleles and maps to 44 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000045316.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000080602.5	map7d2b-201	5808	649aa	ENSDARP00000075049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FG02	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000140170.4	map7d2b-202	3407	618aa	ENSDARP00000117045.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QIM5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000173052.2	map7d2b-204	3049	563aa	ENSDARP00000142413.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000173220.2	map7d2b-205	831	144aa	ENSDARP00000142522.1	Nonsense mediated decay	-	-
ENSDART00000143625.2	map7d2b-203	717	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 831 bps, Translation length: 144 residues

Version

ENSDART00000173220.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000173220.2 map7d2b-205

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Transcript: ENSDART00000173220.2 map7d2b-205

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