Transcript: ENSDART00000173192.2 pcdh1b-202

Description

protocadherin 1b [Source:ZFIN;Acc:ZDB-GENE-091015-2]

Gene Synonyms

pcdh1

Location

About this transcript

This transcript has 5 exons, is annotated with 66 domains and features, is associated with 5306 variant alleles and maps to 183 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173192.2	pcdh1b-202	6717	1093aa	ENSDARP00000142528.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LGZ8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000105588.5	pcdh1b-201	4563	1211aa	ENSDARP00000096365.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F376	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 6,717 bps, Translation length: 1,093 residues

Version

ENSDART00000173192.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]