Transcript: ENSDART00000173181.2 CSNK1A1-207

Description

casein kinase 1, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-020419-19]

Location

Chromosome 14: 38,770,630-38,782,985 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 350 variant alleles and maps to 115 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000052674.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000121429.4	CSNK1A1-203	2471	365aa	ENSDARP00000107253.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JHE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000130655.4	CSNK1A1-202	2341	325aa	ENSDARP00000104911.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JGT0	-
ENSDART00000173351.2	CSNK1A1-201	2340	337aa	ENSDARP00000142599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JG73	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170906.3	CSNK1A1-204	2267	353aa	ENSDARP00000130178.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8JHD9	-
ENSDART00000173181.2	CSNK1A1-207	876	71aa	ENSDARP00000142150.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000172866.2	CSNK1A1-205	783	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000173370.2	CSNK1A1-206	734	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 4, Transcript length: 876 bps, Translation length: 71 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000173181.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000173181.2 CSNK1A1-207

Summary

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Transcript: ENSDART00000173181.2 CSNK1A1-207

Summary

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