Transcript: ENSDART00000173164.2 FAM13B-201

Description

family with sequence similarity 13 member B [Source:ZFIN;Acc:ZDB-GENE-030131-4913]

Location

Chromosome 14: 24,326,461-24,332,786 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 223 variant alleles and maps to 17 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000076779.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000126894.3	FAM13B-204	5498	961aa	ENSDARP00000105416.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FEF1	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000113376.3	FAM13B-202	5224	890aa	ENSDARP00000102677.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QI23	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000173164.2	FAM13B-201	539	180aa	ENSDARP00000142469.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000172784.2	FAM13B-203	6089	678aa	ENSDARP00000142137.1	Nonsense mediated decay	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 539 bps, Translation length: 180 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000173164.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000173164.2 FAM13B-201

Summary

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Transcript: ENSDART00000173164.2 FAM13B-201

Summary

About Us

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