Transcript: ENSDART00000173097.2 zzef1-203

Description

zinc finger, ZZ-type with EF hand domain 1 [Source:ZFIN;Acc:ZDB-GENE-041222-2]

Gene Synonyms

si:dkey-7b17.3

Location

Chromosome 5: 31,049,742-31,052,519 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 416 variant alleles and maps to 19 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000094380.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162121.3	zzef1-202	9117	3038aa	ENSDARP00000141398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IX34	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000141463.3	zzef1-201	11266	3027aa	ENSDARP00000114487.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2CES1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000173097.2	zzef1-203	539	179aa	ENSDARP00000142444.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LGR5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 539 bps, Translation length: 179 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000173097.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000173097.2 zzef1-203

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Transcript: ENSDART00000173097.2 zzef1-203

Summary

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