Transcript: ENSDART00000172886.2 pdzd3b-202

Description

PDZ domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081022-151]

Gene Synonyms

zgc:194812

Location

About this transcript

This transcript has 3 exons, is annotated with 14 domains and features, is associated with 316 variant alleles and maps to 45 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000078049.4	pdzd3b-201	1976	524aa	ENSDARP00000072512.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R510	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172886.2	pdzd3b-202	551	184aa	ENSDARP00000142506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A140LGX7	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 551 bps, Translation length: 184 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000172886.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]