Transcript: ENSDART00000172863.2 LRP1-205

Description

low density lipoprotein receptor-related protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7889]

Location

Chromosome 11: 1,810,027-1,843,828 forward strand.

About this transcript

This transcript has 25 exons, is annotated with 124 domains and features, is associated with 760 variant alleles and maps to 73 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000097827.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000164394.2	LRP1-207	13518	4505aa	ENSDARP00000133829.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000154967.4	LRP1-201	4949	1540aa	ENSDARP00000129678.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000172863.2	LRP1-205	3571	1190aa	ENSDARP00000142573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000173023.2	LRP1-202	3053	979aa	ENSDARP00000142561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000173062.2	LRP1-206	1685	128aa	ENSDARP00000142391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000173330.2	LRP1-203	582	193aa	ENSDARP00000142425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000173143.2	LRP1-204	309	102aa	ENSDARP00000142123.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 25, Coding exons: 25, Transcript length: 3,571 bps, Translation length: 1,190 residues

Version

ENSDART00000172863.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000172863.2 LRP1-205

Summary

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Transcript: ENSDART00000172863.2 LRP1-205

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