Transcript: ENSDART00000172823.2 SMIM7-201

Description

small integral membrane protein 7 [Source:ZFIN;Acc:ZDB-GENE-060810-180]

Location

About this transcript

This transcript has 4 exons, is annotated with 8 domains and features, is associated with 296 variant alleles and maps to 35 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000078916.6	SMIM7-202	1518	77aa	ENSDARP00000073375.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A5PLC9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172879.2	SMIM7-203	490	91aa	ENSDARP00000142236.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000172823.2	SMIM7-201	197	62aa	ENSDARP00000142428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 197 bps, Translation length: 62 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000172823.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.