Transcript: ENSDART00000172820.2 sec24b-204

Description

SEC24 homolog B, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-030131-6565]

Gene Synonyms

wu:fa16f04

Location

Chromosome 14: 1,127,866-1,138,686 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 290 variant alleles and maps to 20 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000071906.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000106708.6	sec24b-201	6721	1184aa	ENSDARP00000097487.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F715	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000190043.1	sec24b-205	6610	1147aa	ENSDARP00000149303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QCB9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000160246.2	sec24b-202	1919	587aa	ENSDARP00000136732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000172820.2	sec24b-204	421	141aa	ENSDARP00000142516.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000167270.2	sec24b-203	423	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 421 bps, Translation length: 141 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000172820.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000172820.2 sec24b-204

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000172820.2 sec24b-204

Summary

About Us

Get help

Our sister sites

Follow us