Transcript: ENSDART00000172813.2 LINS1-201

Description

lines homolog 1 [Source:ZFIN;Acc:ZDB-GENE-101019-1]

Location

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 316 variant alleles and maps to 39 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000173348.2	LINS1-202	2126	604aa	ENSDARP00000142070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QRU0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000128376.3	LINS1-203	1824	604aa	ENSDARP00000110453.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QRU0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172813.2	LINS1-201	866	244aa	ENSDARP00000142462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 866 bps, Translation length: 244 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000172813.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.