Transcript: ENSDART00000172801.2 pcdh10b-202

Description

protocadherin 10b [Source:ZFIN;Acc:ZDB-GENE-030721-4]

Gene Synonyms

wu:fq16b02

Location

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 470 variant alleles and maps to 22 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162714.3	pcdh10b-201	4672	1026aa	ENSDARP00000134223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q805F0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172801.2	pcdh10b-202	447	119aa	ENSDARP00000142096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 447 bps, Translation length: 119 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000172801.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.