Transcript: ENSDART00000172766.2 psd3l-204

Location

Chromosome 10: 7,182,168-7,221,801 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 1788 variant alleles and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000104820.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166206.2	psd3l-203	5460	961aa	ENSDARP00000130428.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000186788.1	psd3l-205	1125	374aa	ENSDARP00000154205.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32TZH6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172766.2	psd3l-204	750	165aa	ENSDARP00000142332.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000187539.1	psd3l-206	315	104aa	ENSDARP00000156953.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000157987.2	psd3l-201	886	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000163673.2	psd3l-202	535	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 750 bps, Translation length: 165 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000172766.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000172766.2 psd3l-204

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000172766.2 psd3l-204

Summary

About Us

Get help

Our sister sites

Follow us