Transcript: ENSDART00000172586.2 si:ch211-272n13.3-204

Description

si:ch211-272n13.3 [Source:ZFIN;Acc:ZDB-GENE-081104-216]

Location

Chromosome 25: 3,592,690-3,623,847 reverse strand.

About this transcript

This transcript has 14 exons, is annotated with 30 domains and features, is associated with 808 variant alleles and maps to 22 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099768.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166363.2	si:ch211-272n13.3-202	1361	306aa	ENSDARP00000133379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IHY6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000171863.2	si:ch211-272n13.3-203	4603	1528aa	ENSDARP00000135464.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4INE7	-
ENSDART00000172586.2	si:ch211-272n13.3-204	2675	892aa	ENSDARP00000135700.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IM26	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000164149.2	si:ch211-272n13.3-201	2086	488aa	ENSDARP00000137195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IM61	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000188569.1	si:ch211-272n13.3-205	915	304aa	ENSDARP00000145639.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q448	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,675 bps, Translation length: 892 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000172586.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000172586.2 si:ch211-272n13.3-204

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Transcript: ENSDART00000172586.2 si:ch211-272n13.3-204

Summary

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