Transcript: ENSDART00000172463.2 nhsb-204

Description

Nance-Horan syndrome b (congenital cataracts and dental anomalies) [Source:ZFIN;Acc:ZDB-GENE-090617-2]

Location

Chromosome 11: 30,075,212-30,078,971 forward strand.

About this transcript

This transcript has 3 exons, is associated with 84 variant alleles and maps to 15 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000079977.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000189770.1	nhsb-205	4827	1608aa	ENSDARP00000154662.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000164139.2	nhsb-203	7988	1536aa	ENSDARP00000139009.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000191011.1	nhsb-206	4809	1602aa	ENSDARP00000145118.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000112254.4	nhsb-201	4566	1521aa	ENSDARP00000103566.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000161160.2	nhsb-202	1910	170aa	ENSDARP00000130948.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000172463.2	nhsb-204	443	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 443 bps,

Version

ENSDART00000172463.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000172463.2 nhsb-204

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Transcript: ENSDART00000172463.2 nhsb-204

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