Transcript: ENSDART00000172408.2 arhgap11a-204

Description

Rho GTPase activating protein 11A [Source:ZFIN;Acc:ZDB-GENE-040426-2562]

Gene Synonyms

wu:fc02e04, wu:fc55g06, wu:fe01b01, zgc:77004

Location

Chromosome 17: 92,784-114,121 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 15 domains and features, is associated with 701 variant alleles and maps to 101 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000100019.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000172408.2	arhgap11a-204	3882	890aa	ENSDARP00000136955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ILK3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000157784.2	arhgap11a-201	2360	461aa	ENSDARP00000137263.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMZ9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000160738.2	arhgap11a-202	853	285aa	ENSDARP00000133614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IIN6	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000168427.2	arhgap11a-203	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,882 bps, Translation length: 890 residues

Version

ENSDART00000172408.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000172408.2 arhgap11a-204

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Transcript: ENSDART00000172408.2 arhgap11a-204

Summary

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