Transcript: ENSDART00000172367.2 sgip1b-202

Description

SH3GL interacting endocytic adaptor 1b [Source:ZFIN;Acc:ZDB-GENE-131121-110]

Gene Synonyms

si:dkey-24m12.3

Location

Chromosome 2: 14,276,639-14,390,627 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 29 domains and features, is associated with 181 variant alleles and maps to 95 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000101215.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000172367.2	sgip1b-202	4543	737aa	ENSDARP00000138512.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000188572.1	sgip1b-203	2740	638aa	ENSDARP00000146824.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000189332.1	sgip1b-204	2692	622aa	ENSDARP00000152028.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000164786.2	sgip1b-201	2030	593aa	ENSDARP00000141937.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 4,543 bps, Translation length: 737 residues

Version

ENSDART00000172367.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000172367.2 sgip1b-202

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Transcript: ENSDART00000172367.2 sgip1b-202

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