Transcript: ENSDART00000172350.2 sem1-203

Description

SEM1 26S proteasome complex subunit [Source:ZFIN;Acc:ZDB-GENE-030131-988]

Gene Synonyms

shfm1, wu:fb55c02, zgc:85901

Location

About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 209 variant alleles and maps to 275 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000038038.6	sem1-201	1475	92aa	ENSDARP00000030382.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NMA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000167772.2	sem1-202	644	71aa	ENSDARP00000130746.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4I9Y2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000172350.2	sem1-203	358	90aa	ENSDARP00000137837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IU67	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 358 bps, Translation length: 90 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000172350.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.