Transcript: ENSDART00000172294.2 CTPS1-202

Description

CTP synthase 1b [Source:ZFIN;Acc:ZDB-GENE-040801-160]

Gene Synonyms

ctpsb, zgc:100914

Location

About this transcript

This transcript has 17 exons, is annotated with 17 domains and features, is associated with 63 variant alleles and maps to 170 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000172294.2	CTPS1-202	2008	589aa	ENSDARP00000139667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JT21	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000193209.1	CTPS1-205	2026	610aa	ENSDARP00000149380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000169689.2	CTPS1-203	821	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000162330.2	CTPS1-201	494	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000162733.2	CTPS1-204	2082	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 2,008 bps, Translation length: 589 residues

Version

ENSDART00000172294.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.