Transcript: ENSDART00000172171.2 EBF1-201

Description

EBF transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-081028-51]

Location

Chromosome 14: 35,023,923-35,246,536 forward strand.

About this transcript

This transcript has 16 exons, is annotated with 18 domains and features, is associated with 4802 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099849.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158634.2	EBF1-205	1836	611aa	ENSDARP00000139406.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000172171.2	EBF1-201	2647	591aa	ENSDARP00000139648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IWI1-1	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000170631.2	EBF1-204	1782	593aa	ENSDARP00000139773.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000163465.2	EBF1-202	862	53aa	ENSDARP00000136599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000164974.3	EBF1-203	636	28aa	ENSDARP00000142321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,647 bps, Translation length: 591 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A0R4IWI1

Version

ENSDART00000172171.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000172171.2 EBF1-201

Summary

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Transcript: ENSDART00000172171.2 EBF1-201

Summary

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