Transcript: ENSDART00000172165.2 PHF10-202

Description

PHD finger protein 10 [Source:ZFIN;Acc:ZDB-GENE-040426-1573]

Location

About this transcript

This transcript has 4 exons, is associated with 438 variant alleles and maps to 84 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000102563.5	PHF10-201	1685	490aa	ENSDARP00000093339.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Z4YI11	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000121598.3	PHF10-203	1665	369aa	ENSDARP00000111415.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000172165.2	PHF10-202	725	112aa	ENSDARP00000138342.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 725 bps, Translation length: 112 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000172165.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.