Transcript: ENSDART00000171829.2 frmpd3-203

Description

FERM and PDZ domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-100316-9]

Location

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 246 variant alleles and maps to 23 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000110004.4	frmpd3-201	10809	1696aa	ENSDARP00000098126.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKJ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000188138.1	frmpd3-204	4248	1415aa	ENSDARP00000155977.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QRZ3	-
ENSDART00000193290.1	frmpd3-205	612	121aa	ENSDARP00000157189.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q5V3	-
ENSDART00000171829.2	frmpd3-203	519	161aa	ENSDARP00000138553.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0J9YJG9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000159660.2	frmpd3-202	252	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 519 bps, Translation length: 161 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000171829.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.