Transcript: ENSDART00000171702.2 prom1a-209

Description

prominin 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1577]

Gene Synonyms

fb75c01, prom1, proml1, wu:fb75c01

Location

Chromosome 14: 46,470,427-46,616,362 reverse strand.

About this transcript

This transcript has 22 exons, is associated with 3642 variant alleles and maps to 153 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000039966.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166550.2	prom1a-206	2972	849aa	ENSDARP00000135195.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IHU7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000105417.5	prom1a-201	5946	832aa	ENSDARP00000096190.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000161010.2	prom1a-205	3625	865aa	ENSDARP00000140084.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0AB32T288	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000171054.2	prom1a-207	3616	862aa	ENSDARP00000131588.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IAM7	-
ENSDART00000105418.6	prom1a-202	2948	841aa	ENSDARP00000096191.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	H7BWW9	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000171476.2	prom1a-208	3069	862aa	ENSDARP00000141823.1	Nonsense mediated decay	A0A0R4IAM7	-
ENSDART00000158144.2	prom1a-204	3051	856aa	ENSDARP00000131037.1	Nonsense mediated decay	A0A0R4IE66	-
ENSDART00000133947.2	prom1a-203	516	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000171702.2	prom1a-209	2670	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 22, Coding exons: 0, Transcript length: 2,670 bps,

Version

ENSDART00000171702.2

Type

Retained intron

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000171702.2 prom1a-209

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Transcript: ENSDART00000171702.2 prom1a-209

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