Transcript: ENSDART00000171680.2 smg7-202

Description

SMG7 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9122]

Gene Synonyms

fa99h10, wu:fa99h10

Location

About this transcript

This transcript has 22 exons, is annotated with 24 domains and features, is associated with 664 variant alleles and maps to 304 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000171680.2	smg7-202	4088	1130aa	ENSDARP00000135427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IJJ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000085976.6	smg7-201	7632	1180aa	ENSDARP00000080411.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LVF3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary

Statistics

Exons: 22, Coding exons: 22, Transcript length: 4,088 bps, Translation length: 1,130 residues

Version

ENSDART00000171680.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.