Transcript: ENSDART00000171547.1 tmem39a-208

Description

transmembrane protein 39A [Source:ZFIN;Acc:ZDB-GENE-030131-1928]

Gene Synonyms

fb92e03, wu:fb92e03, zgc:65781, zgc:77444

Location

Chromosome 1: 39,313-44,484 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 14 domains and features, is associated with 142 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000102746.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000168091.1	tmem39a-204	2207	481aa	ENSDARP00000139614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171547.1	tmem39a-208	1472	259aa	ENSDARP00000137064.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000164075.1	tmem39a-202	905	239aa	ENSDARP00000135294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000160050.1	tmem39a-201	521	111aa	ENSDARP00000130474.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000168660.1	tmem39a-205	196	19aa	ENSDARP00000138450.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000165693.1	tmem39a-203	411	41aa	ENSDARP00000142019.1	Nonsense mediated decay	-
ENSDART00000169744.1	tmem39a-206	807	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-
ENSDART00000170183.1	tmem39a-207	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 1,472 bps, Translation length: 259 residues

Version

ENSDART00000171547.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000171547.1 tmem39a-208

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Transcript: ENSDART00000171547.1 tmem39a-208

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