Transcript: ENSDART00000171457.2 si:ch211-207i20.3-203

Description

si:ch211-207i20.3 [Source:ZFIN;Acc:ZDB-GENE-141222-71]

Location

About this transcript

This transcript has 2 exons, is associated with 542 variant alleles and maps to 109 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000106285.5	si:ch211-207i20.3-201	802	253aa	ENSDARP00000097063.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F8Q9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169214.2	si:ch211-207i20.3-202	857	80aa	ENSDARP00000140229.1	Nonsense mediated decay	A0A0R4IXB5	-
ENSDART00000171457.2	si:ch211-207i20.3-203	474	71aa	ENSDARP00000132746.1	Nonsense mediated decay	A0A0R4IEK7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 474 bps, Translation length: 71 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000171457.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.