Transcript: ENSDART00000171392.2 rab6a-204

Description

RAB6A, member RAS onco family [Source:ZFIN;Acc:ZDB-GENE-040426-2849]

Gene Synonyms

fb43c01, wu:fb43c01, zgc:55788

Location

Chromosome 10: 36,695,647-36,710,620 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 20 domains and features, is associated with 333 variant alleles and maps to 249 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103714.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000169015.2	rab6a-203	4092	208aa	ENSDARP00000130990.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9ULS4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000171392.2	rab6a-204	2961	208aa	ENSDARP00000134740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M1P3Z5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000166992.2	rab6a-201	751	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000167735.2	rab6a-202	616	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,961 bps, Translation length: 208 residues

Version

ENSDART00000171392.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

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Transcript: ENSDART00000171392.2 rab6a-204

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Transcript: ENSDART00000171392.2 rab6a-204

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