Transcript: ENSDART00000171385.2 arnt2-205

Description

aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]

Gene Synonyms

arnt2X, chunp6921, unm t30256, unm_t30256, zfARNT2, zfARNT2a, zfARNT2b, zfARNT2c

Location

Chromosome 7: 10,701,732-10,800,887 forward strand.

About this transcript

This transcript has 12 exons, is associated with 2877 variant alleles and maps to 127 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000103697.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158162.2	arnt2-201	2296	737aa	ENSDARP00000136894.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSDART00000167323.2	arnt2-204	6666	722aa	ENSDARP00000131846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ID51	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000164258.2	arnt2-203	2080	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000171385.2	arnt2-205	1618	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000160229.2	arnt2-202	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 0, Transcript length: 1,618 bps,

Version

ENSDART00000171385.2

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000171385.2 arnt2-205

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Transcript: ENSDART00000171385.2 arnt2-205

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