Transcript: ENSDART00000171300.3 herc1-202

Description

HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8542]

Gene Synonyms

wu:fb14f01, zmp:0000000833

Location

Chromosome 7: 29,211,066-29,227,786 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 24 domains and features, is associated with 122 variant alleles and maps to 35 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077901.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000109030.5	herc1-201	15029	4852aa	ENSDARP00000098798.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FBA7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171300.3	herc1-202	2990	997aa	ENSDARP00000140961.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IYT9	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000173780.2	herc1-204	1508	502aa	ENSDARP00000142861.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSP4	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000173973.2	herc1-205	667	137aa	ENSDARP00000142936.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSW5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000173598.2	herc1-203	615	205aa	ENSDARP00000142740.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NSC7	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 2,990 bps, Translation length: 997 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000171300.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENSDART00000171300.3 herc1-202

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Transcript: ENSDART00000171300.3 herc1-202

Summary

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