Transcript: ENSDART00000171295.2 slf1-202

Description

SMC5-SMC6 complex localization factor 1 [Source:ZFIN;Acc:ZDB-GENE-141216-402]

Location

Chromosome 5: 50,371,951-50,437,164 forward strand.

About this transcript

This transcript has 18 exons, is annotated with 24 domains and features, is associated with 1288 variant alleles and maps to 36 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000102118.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000171295.2	slf1-202	3516	897aa	ENSDARP00000136942.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4INB3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000184488.1	slf1-203	3593	736aa	ENSDARP00000151850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000167163.2	slf1-201	2417	729aa	ENSDARP00000133242.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 18, Coding exons: 18, Transcript length: 3,516 bps, Translation length: 897 residues

Version

ENSDART00000171295.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000171295.2 slf1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000171295.2 slf1-202

Summary

About Us

Get help

Our sister sites

Follow us