Transcript: ENSDART00000171180.2 trafd1-202

Description

TRAF-type zinc finger domain containing 1 [Source:NCBI gene (formerly Entrezgene);Acc:100037363]

Gene Synonyms

zgc:162228

Location

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features, is associated with 278 variant alleles and maps to 30 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000114473.3	trafd1-201	2785	565aa	ENSDARP00000099529.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A4IG51	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171180.2	trafd1-202	493	140aa	ENSDARP00000131060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000172426.2	trafd1-203	606	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 493 bps, Translation length: 140 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000171180.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.