Transcript: ENSDART00000171101.2 cnp-208

Description

2'',3''-cyclic nucleotide 3'' phosphodiesterase [Source:ZFIN;Acc:ZDB-GENE-030521-29]

Gene Synonyms

CNPase, cnpl, fd21d08, fi37a10, sb:cb662, si:ch73-158e11.4, wu:fd21d08, wu:fd44a05, wu:fi35d08, wu:fi37a10, zRICH

Location

Chromosome 3: 17,933,208-17,940,542 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 21 domains and features, is associated with 206 variant alleles and maps to 191 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070822.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000185047.1	cnp-209	5423	443aa	ENSDARP00000148933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000104299.5	cnp-201	2934	424aa	ENSDARP00000095074.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8M3B0U8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000162242.2	cnp-203	910	252aa	ENSDARP00000137524.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000166289.2	cnp-206	910	255aa	ENSDARP00000138283.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000171101.2	cnp-208	849	219aa	ENSDARP00000138110.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000164853.2	cnp-204	751	203aa	ENSDARP00000135781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000162144.2	cnp-202	642	110aa	ENSDARP00000137949.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000165644.2	cnp-205	502	122aa	ENSDARP00000131408.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000167731.2	cnp-207	445	8aa	ENSDARP00000130420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 849 bps, Translation length: 219 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000171101.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

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Transcript: ENSDART00000171101.2 cnp-208

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Transcript: ENSDART00000171101.2 cnp-208

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