Transcript: ENSDART00000171063.2 supt3h-204

Description

SPT3 homolog, SAGA and STAGA complex component [Source:ZFIN;Acc:ZDB-GENE-040718-370]

Gene Synonyms

zgc:92246

Location

Chromosome 17: 5,221,331-5,424,175 reverse strand.

About this transcript

This transcript has 7 exons, is annotated with 7 domains and features, is associated with 2861 variant alleles and maps to 114 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000098141.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000157937.2	supt3h-201	1461	380aa	ENSDARP00000139016.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IR35	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSDART00000188102.1	supt3h-205	4980	371aa	ENSDARP00000150750.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHL1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000171063.2	supt3h-204	638	185aa	ENSDARP00000137793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000167275.2	supt3h-203	566	162aa	ENSDARP00000132745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000160983.2	supt3h-202	387	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 638 bps, Translation length: 185 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000171063.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Upcoming Ensembl Platform Transition

Transcript: ENSDART00000171063.2 supt3h-204

Summary

About Us

Get help

Our sister sites

Follow us

Upcoming Ensembl Platform Transition

Favourite species

All species

Recent locations

Transcript: ENSDART00000171063.2 supt3h-204

Summary

About Us

Get help

Our sister sites

Follow us