Transcript: ENSDART00000170822.2 tmx4-202

Description

thioredoxin-related transmembrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-050706-155]

Gene Synonyms

im:6891941, zgc:112303

Location

Chromosome 17: 3,993,772-4,014,707 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 10 domains and features, is associated with 601 variant alleles and maps to 70 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000101512.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000186174.1	tmx4-203	1883	288aa	ENSDARP00000148577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q3R2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000168613.2	tmx4-201	1883	275aa	ENSDARP00000137220.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IM23	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000170822.2	tmx4-202	699	226aa	ENSDARP00000137207.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IPE3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 699 bps, Translation length: 226 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000170822.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000170822.2 tmx4-202

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Transcript: ENSDART00000170822.2 tmx4-202

Summary

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