Transcript: ENSDART00000170678.2 usp48-203

Description

ubiquitin specific peptidase 48 [Source:ZFIN;Acc:ZDB-GENE-050522-197]

Gene Synonyms

im:7139343, zgc:112364

Location

Chromosome 11: 36,452,516-36,474,306 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 8 domains and features, is associated with 945 variant alleles and maps to 45 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000090301.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123591.3	usp48-201	6559	1092aa	ENSDARP00000111894.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EY58	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000165203.2	usp48-202	4226	1047aa	ENSDARP00000130019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IB93	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000170678.2	usp48-203	1867	515aa	ENSDARP00000131033.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ID87	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 1,867 bps, Translation length: 515 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000170678.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000170678.2 usp48-203

Summary

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Transcript: ENSDART00000170678.2 usp48-203

Summary

About Us

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