Transcript: ENSDART00000170277.2 PHOX2B-202

Description

paired like homeobox 2Bb [Source:ZFIN;Acc:ZDB-GENE-050407-3]

Location

About this transcript

This transcript has 4 exons, is annotated with 13 domains and features, is associated with 50 variant alleles and maps to 129 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000163766.2	PHOX2B-201	2197	284aa	ENSDARP00000130156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5I7G4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000106333.5	PHOX2B-203	3956	284aa	ENSDARP00000097111.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5I7G4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000170277.2	PHOX2B-202	1004	206aa	ENSDARP00000137086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,004 bps, Translation length: 206 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000170277.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.